PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21202_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 181aa    MW: 20391 Da    PI: 9.83
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21202_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-191160255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  RrC21202_p1 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60
                 6********.**********883....5***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-281167No hitNo description
SMARTSM003801.5E-351174IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-221168IPR016177DNA-binding domain
PfamPF008473.0E-131160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-311168IPR001471AP2/ERF domain
PROSITE profilePS5103222.4051168IPR001471AP2/ERF domain
PRINTSPR003675.3E-111223IPR001471AP2/ERF domain
PRINTSPR003675.3E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG  60
IKAKTNFPPP PLSLNLNLNL NDFPPSPSAT SADNHHSQHH WFPAPLSIPD KHHHHRVFLR  120
TGVLNDKTSD LHSNEEQLYF AASPATTTSS PRVVEFPMLS SSPSVRRGLA IDLNEPPPLW  180
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21768163ATERF1
3gcc_A4e-21768163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558833e-63AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds.
GenBankAC0101553e-63AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAY0997983e-63AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankBT0026043e-63BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankCP0026843e-63CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655107.18e-93PREDICTED: ethylene-responsive transcription factor 12-like
RefseqXP_009109734.18e-93PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID66e-85ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A078DLS69e-93A0A078DLS6_BRANA; BnaA08g18390D protein
TrEMBLM4D3289e-93M4D328_BRARP; Uncharacterized protein
STRINGBra010881.1-P3e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-78ERF domain protein 12